| Family1 | Species1 | Family2 | Species2 | SCUS score | Similarity |
| Fabaceae | Medicago truncatula | Fabaceae | Glycine soja | 7.63 | Similar |
| Fabaceae | Medicago truncatula | Malvaceae | Gossypium arboreum | 9.03 | Highly Similar |
| Fabaceae | Medicago truncatula | Malvaceae | Gossypium hirsutum | 9.03 | Highly Similar |
| Fabaceae | Medicago truncatula | Malvaceae | Gossypium raimondii | 9.01 | Highly Similar |
| Fabaceae | Medicago truncatula | Asteraceae | Helianthus annuus | 6.00 | Moderately similar |
| Fabaceae | Medicago truncatula | Malvaceae | Herrania umbratica | 8.04 | Similar |
| Fabaceae | Medicago truncatula | Euphorbiaceae | Hevea brasiliensis | 7.49 | Similar |
| Fabaceae | Medicago truncatula | Poaceae | Hordeum vulgare | 4.05 | Dis similar |
| Fabaceae | Medicago truncatula | Euphorbiaceae | Jatropha curcas | 8.48 | Similar |
| Fabaceae | Medicago truncatula | Asteraceae | Lactuca sativa | 7.89 | Similar |
| Fabaceae | Medicago truncatula | Fabaceae | Lupinus angustifolius | 8.50 | Similar |
| Fabaceae | Medicago truncatula | Euphorbiaceae | Manihot esculenta | 7.83 | Similar |
| Fabaceae | Medicago truncatula | Fabaceae | Medicago truncatula | 10.00 | Highly Similar |
| Fabaceae | Medicago truncatula | Cucurbitaceae | Momordica charantia | 7.99 | Similar |
| Fabaceae | Medicago truncatula | Musaceae | Musa acuminata subsp. malaccensis | 5.82 | Moderately similar |
| Fabaceae | Medicago truncatula | Solanaceae | Nicotiana attenuata | 9.00 | Highly Similar |
| Fabaceae | Medicago truncatula | Solanaceae | Nicotiana sylvestris | 9.09 | Highly Similar |
| Fabaceae | Medicago truncatula | Solanaceae | Nicotiana tabacum | 9.05 | Highly Similar |
| Fabaceae | Medicago truncatula | Solanaceae | Nicotiana tomentosiformis | 9.07 | Highly Similar |
| Fabaceae | Medicago truncatula | Poaceae | Oryza brachyantha | 4.00 | Dis similar |