| Family1 | Species1 | Family2 | Species2 | SCUS score | Similarity |
| Cucurbitaceae | Benincasa hispida | Rutaceae | Citrus sinensis | 8.39 | Similar |
| Cucurbitaceae | Benincasa hispida | Cucurbitaceae | Cucumis melo | 9.64 | Highly Similar |
| Cucurbitaceae | Benincasa hispida | Cucurbitaceae | Cucumis sativus | 9.68 | Highly Similar |
| Cucurbitaceae | Benincasa hispida | Cucurbitaceae | Cucurbita maxima | 9.07 | Highly Similar |
| Cucurbitaceae | Benincasa hispida | Cucurbitaceae | Cucurbita moschata | 8.90 | Similar |
| Cucurbitaceae | Benincasa hispida | Cucurbitaceae | Cucurbita pepo subsp. pepo | 8.86 | Similar |
| Cucurbitaceae | Benincasa hispida | Asteraceae | Cynara cardunculus var. scolymus | 8.02 | Similar |
| Cucurbitaceae | Benincasa hispida | Apiaceae | Daucus carota subsp. sativus | 8.99 | Similar |
| Cucurbitaceae | Benincasa hispida | Malvaceae | Durio zibethinus | 7.73 | Similar |
| Cucurbitaceae | Benincasa hispida | Brassicaceae | Eutrema salsugineum | 6.05 | Moderately similar |
| Cucurbitaceae | Benincasa hispida | Fabaceae | Glycine max | 7.44 | Similar |
| Cucurbitaceae | Benincasa hispida | Fabaceae | Glycine soja | 7.47 | Similar |
| Cucurbitaceae | Benincasa hispida | Malvaceae | Gossypium arboreum | 9.46 | Highly Similar |
| Cucurbitaceae | Benincasa hispida | Malvaceae | Gossypium hirsutum | 9.46 | Highly Similar |
| Cucurbitaceae | Benincasa hispida | Malvaceae | Gossypium raimondii | 9.53 | Highly Similar |
| Cucurbitaceae | Benincasa hispida | Asteraceae | Helianthus annuus | 6.79 | Moderately similar |
| Cucurbitaceae | Benincasa hispida | Malvaceae | Herrania umbratica | 7.80 | Similar |
| Cucurbitaceae | Benincasa hispida | Euphorbiaceae | Hevea brasiliensis | 6.99 | Moderately similar |
| Cucurbitaceae | Benincasa hispida | Poaceae | Hordeum vulgare | 5.17 | Moderately similar |
| Cucurbitaceae | Benincasa hispida | Euphorbiaceae | Jatropha curcas | 7.80 | Similar |